Meaning of Spike Viewer Graphs
I’ve started to explore the OpenEphys GUI with the stereotrode
example data that comes with it, and I have some questions about the
Spike Viewer. It looks like it’s performing PCA for spike-sorting, but I
haven’t found any documentation that explicitly clarifies this. Would
you be able to answer a few questions for me?
-
How does what’s displayed on the waveform viewer relate to the raw
signal? If I’m not mistaken, each electrode on the stereotrode has only
one channel, so I would only expect one waveform. Why are there five
waveforms displayed in the waveform viewer? Are these the principal
components used to sort the spikes?
– What is the x-axis on the waveform viewer and what are its units?
-
What is the y-axis on the peak viewer, and what are the units for the
x- and y-axes on the peak viewer? The x-axis appears to be spike amplitude.
If you know of any good resources for further reading, I’d appreciate those as well!
Best,
Michael Loftus
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